Welcome to the UCSC Stem Cell Genomics Browser. The browser is a suite of web-based tools to integrate, visualize and analyze stem cell genomics and clinical data. This browser displays a whole-genome and pathway-oriented view of genome-wide experimental measurements for individual and sets of samples alongside their associated experimental information.

This site hosts the public UCSC Stem Cell Genomics Browser. The public site contains a rapidly growing body of publicly available stem cell genomic data, including published studies on GEO and datasets obtained directly from individual labs.

We encourage you to explore these data with our tools. The browser enables investigators to order, filter, aggregate, classify and display data interactively based on any given feature set including experimental features, annotated biological pathways, and user-edited collections of genes. Standard statistical tools are integrated to provide quantitative analysis of whole genomic data or any of its subsets.

The browser is developed and maintained by the UCSC Stem Cell Genomics Group, led by David Haussler and Josh Stuart, working closely with the UCSC Cancer Genomics and UCSC Human Genome Browser team at the Center for Biomolecular Science and Engineering (CBSE) at the University of California Santa Cruz (UCSC). If you have feedback or questions concerning the tools or data on this website, feel free to contact us.

The public Stem Cell Genomics Browser is free for academic, nonprofit, and personal use. Any use of the public browser requires credits to the browser site. The UCSC Stem Cell Genomics Browser software is under copyright protection. Please contact us if you are interested in any use of the software code.

For assistance with questions or problems regarding the UCSC Stem Cell Genomics Browser software, database, genome assemblies, see the Help.

The data displayed in the Stem Cell Genomics Browser is under the same condition of use as specified at the original data download site.